江汉大学学报(自然科学版) ›› 2021, Vol. 49 ›› Issue (6): 63-71.doi: 10.16389/j.cnki.cn42-1737/n.2021.06.008

• 医学 • 上一篇    下一篇

运用生物信息学及分子对接探讨熊果酸治疗宫颈癌的分子机制

杨光   

  1. 江汉大学 医学院,湖北 武汉 430056
  • 发布日期:2021-12-17
  • 作者简介:杨光(1977— ),女,高级实验师,博士,研究方向:靶向中药制剂及其机制。
  • 基金资助:
    江汉大学博士科研启动经费资助项目(3003/06000032)

Investigation on Molecular Mechanism of Ursolic Acid in the Treatment of Cervical Cancer Based on Bioinformatics and Molecular Docking

YANG Guang   

  1. School of Medicine,Jianghan University,Wuhan 430056,Hubei,China
  • Published:2021-12-17

摘要: 目 的 采用生物信息学及分子对接术探讨熊果酸治疗宫颈癌的分子靶点和作用机制。方 法 运用TCMSP、DrugBank 数据库检索熊果酸的疾病潜在靶点。在GeneCards 及GEO 数据库检 索疾病“cervical cancer”,限定物种为“Homo sapiens”,通过分析筛选,得到GSE63514 基因表达谱芯片数据,综合筛选得到熊果酸治疗宫颈癌的潜在靶点共39 个。通过Cytoscape3.8.0 软件下BisoGenet 及CytoNCA 插件创建靶点基因蛋白互作网络,并进行药物与疾病基因的GO 和基因-KEGG 通路分析。利用AutoDock 进行分子对接,预测熊果酸和疾病核心靶点的结合度,利用PyMOL 软件绘图。结 果 熊果酸治疗宫颈癌共39 个潜在靶点,GO 功能1 171 条,KEGG 通路172 条,筛选出与肿瘤相关的主要信号通路有:pathways in cancer、TNF signaling pathway、PI3K-Akt signaling pathway、p53 signaling pathway、apoptosis 等。成功验证熊果酸小分子与RELA、JUN、CDKN1A、ICAM1、STAT3、NFKBIA基因的分子对接。结 论 通过生物信息学等方法,揭示熊果酸通过抑制肿瘤细胞增殖、诱导细胞凋亡、抗血管生成及抗炎等相关基因及通路发挥多靶点和多通路的抗宫颈癌作用。

关键词: 生物信息学, GEO 差异基因, 分子对接, 宫颈癌, 作用机制

Abstract: Objective To investigate the molecular targets and mechanism of ursolic acid in the treatment of cervical cancer by bioinformatics and molecular docking. Methods The potential disease targets of ursolic acid were searched by TCMSP and DrugBank databases. In GeneCards and GEO databases,the disease“cervical cancer”was searched,and the limited species was“Homo sapiens”. Through analysis and screening,the GSE63514 gene expression profile chip data were obtained,and 39 potential targets for the treatment of cervical cancer were obtained by comprehensive screening. The target gene protein interaction network was established by BisoGenet and CytoNCA plugin under Cytoscape3.8.0 software,and the GO and gene-KEGG pathways of drug and disease genes were analyzed. AutoDock was used for molecular docking to predict the binding degree of ursolic acid and the core target of the disease. PyMOL software was used for plotting. Results There were 39 potential targets of ursolic acid in the treatment of cervical cancer,including 1 171 GO functions and 172 KEGG pathways. The main tumor-related signalling pathways were screened out as follows:pathways in cancer,TNF signalling pathway,PI3K-Akt signalling pathway,p53 signalling pathway,apoptosis,etc. Molecular docking of ursolic acid with RELA,JUN,CDKN1A,ICAM1,STAT3 and NFKBIA genes was successfully verified. Conclusion In this study,bioinformatical methods are used to reveal that ursolic acid plays a multi-target and multi-pathway role in anti-cervical cancer by inhibiting tumor cell proliferation,inducing apoptosis,anti-angiogenesis and anti-inflammatory genes and pathways.

Key words: bioinformatics, GEO differential genes, molecular docking, cervical cancer, mechanism

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